publications
2025
- BINSEQ: A Family of High-Performance Binary Formats for Nucleotide Sequences
- scBaseCamp: An AI agent-curated, uniformly processed, and continually expanding single cell data repository
2024
- Computational Methods in Functional Genomics and Transcriptional Dynamics: Systems-Level Insights Into Neurodegeneration and Neurodevelopmental Disorders
- CRISPR screening by AAV episome-sequencing (CrAAVe-seq) is a highly scalable cell type-specific in vivo screening platform
- A Massively Parallel CRISPR-Based Screening Platform for Modifiers of Neuronal Activity
2023
- Antibodies to repeat-containing antigens in Plasmodium falciparum are exposure-dependent and short-lived in children in natural malaria infections
- Functional regulatory variants implicate distinct transcriptional networks in dementia
- Addressing biases in gene-set enrichment analysis: a case study of Alzheimer's Disease
- Higher-order combinatorial chromatin perturbations by engineered CRISPR-Cas12a for functional genomics
- GIA: A genome interval arithmetic toolkit for high performance interval set operations
- Autism genes converge on microtubule biology and RNA-binding proteins during excitatory neurogenesis
2022
2021
- Sources of persistent malaria transmission in a setting with effective malaria control in eastern Uganda: a longitudinal, observational cohort study
- Monoclonal antibodies block transmission of genetically diverse Plasmodium falciparum strains to mosquitoes
- Optimization of whole-genome sequencing of Plasmodium falciparum from low-density dried blood spot samples